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1.
Mol Biol Rep ; 51(1): 378, 2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38427103

ABSTRACT

BACKGROUND: The Ganga River System (GRS) is a biodiversity hotspot, its ecological richness is shaped by a complex geological history. In this study, we examined the genetic diversity, spatial connectivity, and population structure of the Asian Silurid catfish, Wallago attu, across seven tributaries of the GRS. METHODS AND RESULTS: We employed three mitochondrial DNA (mtDNA) regions: cytochrome c oxidase subunit I (COXI), cytochrome b (Cyt b), and control region (CR). Our comprehensive dataset encompassed 2420 bp of mtDNA, derived from 176 W. attu individuals across 19 sampling sites within the seven rivers of GRS. Our findings revealed high gene diversity (Hd:0.99) within W. attu populations. Analysis of Molecular Variance (AMOVA) highlighted that maximum genetic variations were attributed within the populations, and the observed genetic differentiation among the seven populations of W. attu ranged from low to moderate. Network analysis uncovered the presence of three distinct genetic clades, showing no specific association with seven studied rivers. Bayesian skyline plots provided insights into the demographic history of W. attu, suggesting a recent population expansion estimated to have occurred approximately 0.04 million years ago (mya) during the Pleistocene epoch. CONCLUSIONS: These results significantly enhance our understanding of the genetic diversity and spatial connectivity of W. attu, serving as a vital foundation for developing informed conservation strategies and the sustainable management of this economically valuable resource within the Ganga River System.


Subject(s)
Catfishes , Rivers , Humans , Animals , DNA, Mitochondrial/genetics , Catfishes/genetics , Bayes Theorem , Genetic Variation/genetics , Phylogeny , Genetics, Population
2.
Sci Rep ; 14(1): 5920, 2024 03 11.
Article in English | MEDLINE | ID: mdl-38467641

ABSTRACT

The three-striped roofed (Batagur dhongoka) is a semi-aquatic turtle that belongs to family Geoemydidae. Due to anthropogenic pressure, it has been facing an intense decline of over 80% in its distribution range in the past 50 years. It is considered as 'Critically Endangered' so effective conservation strategies are needed to protect the species by determining their genetic diversity and population genetic structure. This study investigates the genetic diversity, population structure and demographic pattern of B. dhongoka from two Turtle Rescue and Rehabilitation Centre established near Ganga river using mitochondrial cytochrome b (Cyt b: 1140 bp) ; control region (CR: 451 bp) and ten nuclear microsatellite loci. mtDNA results show low levels of nucleotide diversity (π = 0.0022) in B. dhongoka haplotypes and provide evidence for a low substitution rate. The demographic pattern estimated by the Bayesian skyline plot (BSP) analysis indicates historical stability followed by growth in the effective population size, with a recent reduction in population size from ~ 2 thousand years ago. The microsatellite findings show a moderate level of observed heterozygosity (Ho: 0.49). Bayesian-based clustering analysis revealed weak genetic structures in B. dhongoka and presence of admixed assignations suggesting close genetic relationships. These findings shed light on B. dhongoka's genetic status and underline the necessity of comprehensive rehabilitation and relocation programs and conservation and management techniques to ensure the species' long-term survival. In order to ensure the effective protection and conservation of B. dhongoka, the Government of India has taken a proactive measure by incorporating it into Schedule I of the Wildlife (Protection) Act, 1972, as amended in 2022.


Subject(s)
DNA, Mitochondrial , Turtles , Animals , DNA, Mitochondrial/genetics , Turtles/genetics , Genetic Variation , Endangered Species , Conservation of Natural Resources , Rivers , Bayes Theorem , Genetics, Population , Haplotypes , Microsatellite Repeats/genetics
3.
Zootaxa ; 5271(3): 401-445, 2023 Apr 27.
Article in English | MEDLINE | ID: mdl-37518117

ABSTRACT

The present study enumerates 65 species of Papilionoidea from the Ladakh Himalaya with the geographical locations and adult flight data. All the species are documented by museum vouchers. Most of the species recorded, have restricted distribution or they are endemic to the Pamir-NW Himalaya region. Sixteen species are protected in the Indian Wildlife (Protection) Act, 1972; three species highly protected under schedule I: Baltia butleri, Pieris krueperi, Lasiommata menava; and others under schedule II: Papilio machaon, Parnassius charltonius, Parnassius epaphus, Colias ladakensis, Colias eogene, Colias stoliczkana, Pieris deota, Pontia chloridice, Alpherakya devanica, Pamiria metallica, Paralasa mani, Paralasa kalinda and Polygonia c-album. We report lower occurrences for the endemic Pieris deota, where the migrant Pontia chloridice is reported to fly at more than 600 m higher than earlier records indicated. Lastly, the male and female genitalia of some endemic and rare species are illustrated, including Euchloe daphalis.


Subject(s)
Butterflies , Lepidoptera , Male , Female , Animals , Animals, Wild , Museums
4.
Cladistics ; 39(5): 382-397, 2023 10.
Article in English | MEDLINE | ID: mdl-37200006

ABSTRACT

The Himalayan foothills and associated environment are well-known for driving the rapid diversification of many species and the formation of biodiversity hotspots. The effects of environmental change since the Miocene have accelerated species diversification, and hence are useful for studying population genetic structure, and evolutionary relationships via genetic approaches. To date, the effects of climatic fluctuations on the biogeography of large-bodied lizards have not been assessed comprehensively. Herein, we examine the diversification of Varanus bengalensis, focusing on its genetic structure to provide insights into how landscape structure and climatic fluctuations have shaped species differentiation. We confirm the existence of two distinct lineages within V. bengalensis distributed across the Himalayan foothills and the remainder of mainland India. Divergence analyses revealed the split between the Himalayan foothills and the remainder of the mainland lineages of V. bengalensis in the mid-Pliocene ~3.06 Ma, potentially as a consequence of the Siwalik broadening and climatic fluctuations across the Himalayan foothills. The results suggest recognition of a new lineage of V. bengalensis from the Himalayan foothills as a distinctive evolutionarily significant unit.


Subject(s)
Lizards , Animals , Lizards/genetics , Phylogeny , Biodiversity , Biological Evolution , India
5.
JNMA J Nepal Med Assoc ; 61(258): 154-157, 2023 Feb 01.
Article in English | MEDLINE | ID: mdl-37203969

ABSTRACT

Introduction: A close relationship occurs between the type of bone density and the success of orthodontic mini-implant. The aim of this study was to find out the mean bone density in interradicular areas of the maxilla among patients visiting dental unit of a tertiary care centre. Methods: A descriptive cross-sectional study was performed at the Department of Orthodontics and Dentofacial Orthopedics at a tertiary care centre from 15 January 2022 to 28 June 2022 after taking ethical approval from the Institutional Review Committee (Reference number: UCMS/IRC/175/21). Data was collected from scan reports obtained with a computed tomography scanner. Bone density was measured at 6 mm height from the alveolar crest. Convenience sampling was done. Point estimate and 95% Confidence Interval were calculated. Results: Out of 70 patients, mean bone density at interradicular areas of maxilla was 992.31±204.20 HU (944.46-1040.13, 95% Confidence Interval). Between central and lateral incisor 50 (71.44%) had D2 type of bone density. Conclusions: The mean bone density in inter radicular areas of the maxilla among patients visiting the dental outpatient department was similar to other studies done in similar settings. Keywords: bone density; prevalence; prostheses and implants.


Subject(s)
Dental Implants , Orthodontic Anchorage Procedures , Humans , Cross-Sectional Studies , Maxilla/diagnostic imaging , Bone Density , Tertiary Care Centers , Orthodontic Anchorage Procedures/methods
6.
Multimed Tools Appl ; 82(1): 1289-1311, 2023.
Article in English | MEDLINE | ID: mdl-35729932

ABSTRACT

Facial age and gender recognition have vital applications as consumer profile prediction, social media advertisement, human-computer interaction, image retrieval system, demographic profiling, customized advertisement systems, security and surveillance. This paper presents a study on Single Attribute (Attribute: either Gender or Age) and Multi-Attribute (both Gender and Age) prediction model. We present a review for facial age estimation and gender classification methods based on conventional as well as deep learning approaches developed so far with analysis of their pros, cons and insights for future research. Moreover, this study also enlists the databases used for benchmarking results with their properties for both constrained and unconstrained environment.

7.
Acta Parasitol ; 67(4): 1756-1766, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36306015

ABSTRACT

PURPOSE: Avian haemosporidian may affect the host from body damage to the extinction of a population. Knowledge of their status may help in future avifauna conservation plans. Hence, their status in two bird groups of India and their phylogenetic relationships with other known lineages of the world were examined. METHODS: Cytochrome b gene sequences (479 bp) generated from India and available at MalAvi database were used to study the avian haemosporidian prevalence and phylogenetic analysis of lineages at local and world levels. RESULTS: One common (COLL2) and only once in the study (CYOPOL01, CHD01, CYORUB01, EUMTHA01, GEOCIT01) haemosporidian lineages were discovered. 5.88% prevalence of haemosporidian infection was found in 102 samples belonging to 6 host species. Haemoproteus prevalence was 4.90% across five host species (Phylloscopus trochiloides, Cyornis poliogenys, C. hainanus dialilaemus, C. rubeculoides, Eumiyas thalassinus) and Plasmodium prevalence was 0.98% in Geokichla citrina. Spatial phylogeny at the global level showed that COLL2 lineage, found in C. poliogenys in India, was genetically identical to H. pallidus lineages (COLL2) in parts of Africa, Europe, North America, Malaysia, and the Philippines. The Plasmodium lineage (GEOCIT01) was related to PADOM16 in Egypt, but the sequences were only 93.89% alike. CONCLUSIONS: Four new lineages of Haemoproteus and one of Plasmodium were reported. COLL2 similarity with other H. pallidus lineages may suggest their hosts as possible infection sources.


Subject(s)
Bird Diseases , Haemosporida , Passeriformes , Plasmodium , Protozoan Infections, Animal , Songbirds , Animals , Phylogeny , Protozoan Infections, Animal/epidemiology , Bird Diseases/epidemiology , Haemosporida/genetics , Plasmodium/genetics , Prevalence
8.
PeerJ ; 10: e13993, 2022.
Article in English | MEDLINE | ID: mdl-36132214

ABSTRACT

Background: Human activities have resulted in a rapid increase of modified habitats in proximity to wildlife habitats in the Himalaya. However, it is crucial to understand the extent to which human habitat modification affects wildlife. Mesocarnivores generally possess broader niches than large carnivores and adapt quickly to human activities. Here, we use a case study in the western Himalaya to test the hypothesis that human disturbance influenced mesocarnivore habitat use. Methods: We used camera trapping and mitochondrial DNA-based species identification from faecal samples to obtain mesocarnivore detections. We then compared the responses of mesocarnivores between an anthropogenic site and a less disturbed park along a contiguous gradient in habitat quality. The non-linear pattern in species-specific habitat selection and factors responsible for space usage around villages was captured using hierarchical generalized additive modelling (HGAM) and non-metric multidimensional scaling (NMDS) ordination. Results: Wildlife occurrences along the gradient varied by species. Leopard cat and red fox were the only terrestrial mesocarnivores that occurred in both anthropogenic site and park. We found a shift in habitat selection from less disturbed habitat in the park to disturbed habitat in anthropogenic site for the species detected in both the habitat types. For instance, red fox showed habitat selection towards high terrain ruggedness (0.5 to 0.7 TRI) and low NDVI (-0.05 to 0.2) in the park but no such specific selection in anthropogenic site. Further, leopard cat showed habitat selection towards moderate slope (20°) and medium NDVI (0.5) in park but no prominent habitat selections in anthropogenic site. The results revealed their constrained behaviour which was further supported by the intensive site usage close to houses, agricultural fields and human trails in villages. Conclusions: Our results indicate shifts in habitat selection and intensive site usage by mesocarnivores in the human-modified habitat. In future, this suggests the possibility of conflict and disease spread affecting both the people and wildlife. Therefore, this study highlights the requisite to test the wildlife responses to rapidly growing human expansions in modified habitats to understand the extent of impact. The management strategies need to have an integrated focus for further expansions of modified habitat and garbage disposal strategies, especially in the human-wildlife interface area.


Subject(s)
Carnivora , Panthera , Animals , Animals, Wild , Ecosystem , Foxes
10.
PLoS One ; 17(4): e0266100, 2022.
Article in English | MEDLINE | ID: mdl-35417496

ABSTRACT

The Psyra Walker, 1860, is a typical Sino-Himalayan genus of the subfamily Ennominae, currently known by 18 species/4 subspecies globally and 9 species from India. This study aims to revise the taxonomy and ecology of Indian Psyra by providing a morphology-based diagnostic key, highlighting their altitudinal, habitat and seasonal preferences, and modelling their distribution based on current and future climatic scenarios. Here, we describe a new species, P. variabilis sp. nov. and document 4 species and 1 subspecies as new to India, viz. P. gracilis, P. szetschwana, P. dsagara, P. falcipennis and P. debilis debilis, thus updating the global species count to 19 with 14 species/1 subspecies from India. We also submitted partial mitochondrial COI sequences of P. crypta, P. similaria, P. spurcataria and P. gracilis as novel to the global genetic database and calculated the overall genetic divergence was 5.17% within the genus, suggesting strong monophyly. Being a typical montane genus, most of the species of Psyra were active within 2000-2280 m altitude, 10.55-15.7°C annual mean temperature, 1200-2300 mm annual precipitation and 168-179 NDVI. Psyra species were predominant in wet temperate, mixed coniferous and moist temperate deciduous forests, their abundance and richness being at peak during post-monsoon months of October-November. The major bioclimatic variables influencing the overall distribution of the genus were mean temperature of warmest quarter, temperature seasonality and precipitation of coldest/driest quarter. While two of the modelled species were predicted to lose area occupancy under future climatic scenarios, the narrow-specialist, Trans-Himalayan species P. debilis debilis was projected to gain up to 75% additional area in the years 2041-60. The results of this study will be helpful to identify sites with maximum area loss projection in ecologically fragile Indian Himalaya and initiating conservation management for such climatically vulnerable insect species groups.


Subject(s)
Ecosystem , Moths , Animals , Ecology , Forests , Temperature
11.
J Hered ; 113(4): 444-452, 2022 07 23.
Article in English | MEDLINE | ID: mdl-35373825

ABSTRACT

The hog deer (Axis porcinus) is an endangered cervid with drastic population declines. There are 2 recognized subspecies of hog deer: A. p. porcinus, ranging from Punjab Province in Pakistan, Nepal, and the Northern part of India to Myanmar, and A. p. annamiticus found in Indo-China, Thailand, Laos, Cambodia, and Vietnam. The current geographic range of A. p. annamiticus is still ambiguous. We analyzed variation in the mitochondrial DNA control region (mtDNA CR) to investigate the intra-species structure, differentiation, and demographic history of hog deer from Cambodia (Kratie Province), which we compared with the populations from India and Thailand. We also generated divergence time estimates using a concatenated dataset of complete Cyt b and partial CR. The CR data showed that Cambodian hog deer are genetically differentiated from the mainland Indian and Thai populations, forming a distinct basal clade. The time of divergence indicates that the Cambodian lineage split from the other 2 hog deer lineages around 0.51 Mya, during the Late Pleistocene. The results also suggest strong phylogeographic structure among hog deer: lineage A extends from Terai Arc (foothills of the Himalayas) to Assam, India (A. p. porcinus), lineage B from Manipur, India to Thailand (A. p. annamiticus), and lineage C is only known from Kratie Province, Cambodia. Lineage A exhibited a higher level of genetic diversity than lineages B and C, with recent demographic stability. Thus, the hog deer population in Kratie Province appears to be a distinct lineage that should be treated as an evolutionarily significant unit.


Subject(s)
Deer , Animals , Cambodia , DNA, Mitochondrial/genetics , Deer/genetics , Genetic Variation , India , Phylogeny , Thailand
12.
Comput Intell Neurosci ; 2022: 1503188, 2022.
Article in English | MEDLINE | ID: mdl-35341170

ABSTRACT

Facial gender recognition is a crucial research topic due to its comprehensive use cases, including a demographic gender survey, visitor profile identification, targeted advertisement, access control, security, and surveillance from CCTV. For these real-time applications, the face of a person can be oriented to any angle from the camera axis, and the person can be of any age group, including juveniles. A child's face consists of immature craniofacial feature points in texture and edge compared to an adult face, making it very hard to recognize gender using the child's face. Real-word faces captured in an unconstrained environment make the gender prediction system more complex to identify correctly due to orientation. These factors reduce the accuracy of the existing state-of-the-art models developed so far for real-time facial gender prediction. This paper presents the novelty of facial gender recognition for juveniles, adults, and unconstrained-oriented faces. The progressive calibration network (PCN) detects rotation-invariant faces in the proposed model. Then, a Gabor filter is applied to extract unique edge and texture features from the detected face. The Gabor filter is invariant to illumination and produces texture and edge features with redundant feature coefficients in large dimensions. Gabor has drawbacks such as redundancy and a large dimension resolved by the proposed meanDWT feature optimization method, which optimizes the system's accuracy, the size of the model, and computational timing. The proposed feature engineering model is classified with different classifiers such as Naïve Bayes, Logistic Regression, SVM with linear, and RBF kernel. Its results are compared with the state-of-the-art techniques; detailed experimental analysis is presented and concluded to support the argument. We also present a review of approaches based on conventional and deep learning methods with their pros and cons for facial gender recognition on different datasets available for facial gender recognition.


Subject(s)
Facial Recognition , Recognition, Psychology , Adult , Bayes Theorem , Child , Head , Humans , Photic Stimulation
13.
Int J Legal Med ; 136(6): 1767-1771, 2022 Nov.
Article in English | MEDLINE | ID: mdl-35102447

ABSTRACT

Internationally, illegal wildlife trade involves highly prized and charismatic species and their derivatives. At the same time, common or less known species and their parts are also encountered but receive less attention than charismatic species. Given the increasing demand for wildlife products in many parts of the world, profit, and short supply, many fake articles derived from domestic or wild animals are frequently encountered in the wildlife trade. Jackal horn (locally known as "Siyar or Gidar singhi") is one such fake item widely used in sorcery and other occult practices available through offline and online trading platforms within India. We used a combination of morphological, microscopic hair, and molecular approaches (Cyt b and 16 s rRNA genes) to reveal the true identity of confiscated "jackal horns" (n = 342). Detailed morphological study of the jackal horns showed that it varied in size, shape, color of hair, attachment material, and filling material. The microscopic hair and molecular approaches revealed that all the items sold as jackal horns were fake and made up of protected wild species and domestic animals. Our results confirm the use of the biological samples from few wild species protected under the Wild Life (Protection) Act, 1972, of India. Therefore, the law enforcement agencies are cautioned to get forensic opinions while dealing with such counterfeit items.


Subject(s)
Animals, Wild , Jackals , Animals , Conservation of Natural Resources , Cytochromes b/genetics , Forensic Medicine
14.
Perspect Clin Res ; 13(1): 33-37, 2022.
Article in English | MEDLINE | ID: mdl-35198426

ABSTRACT

BACKGROUND: Although randomized controlled trials (RCTs) are the highest levels of evidence, they might not necessarily be of good quality. Hence, RCTs should always be appraised critically. Critical appraisal is the corroboration of evidence by methodically studying its validity, reliability, and applicability. OBJECTIVE: The primary objective of this study was to do a critical appraisal of the RCTs published in Indian Journal of Pharmacology (IJP) from 2011 to 2016. The secondary objective was to scrutinize how adequately the published RCTs adhere to the Consolidated Standards of Reporting Trials (CONSORT) declaration. MATERIALS AND METHODS: The present study included all RCTs published as full-text articles in IJP from January 2011 to December 2016. The identified RCTs were critically appraised using the critical appraisal checklist based on CONSORT 2010 guidelines and its extensions. RESULTS: According to this analysis, 75% (95% confidence interval [CI]: 0.56-0.87) of the articles had given details about the sample size calculation. Nearly 89.29% (95% CI: 0.72-0.96) of the articles described the method for generating random allocation sequence, but only 35.71% (95% CI: 0.20-0.54) of the articles described allocation concealment method. Almost 35.71% (95% CI: 0.20-0.54) of the trials reported results as per the principle of the intention to treat (ITT). Nearly 21.43% (95% CI: 0.10-0.39) of the studies reported CIs in the present study. CONCLUSION: Allocation concealment method, analysis of the data based on the ITT principle, and reporting CIs were found to be underreported in this study. There should be more emphasis on reporting of allocation concealment, ITT analysis, and CI.

15.
Perspect Clin Res ; 13(1): 25-32, 2022.
Article in English | MEDLINE | ID: mdl-35198425

ABSTRACT

BACKGROUND: The reporting quality of economic research could benefit from enhanced quality assurance procedures. At present, there are small numbers of health economic researches being conducted with Indian context or setting. There is not much clarity about the reporting quality of health economic researches being conducted with Indian context or setting. OBJECTIVE: The primary objective is to of this study was to appraise the quality of reporting of health economic evaluations conducted in the Indian setting and published between January 2014 and December 2018. MATERIALS AND METHODS: This was a retrospective, cross-sectional, descriptive analysis. The MEDLINE in PubMed, Google Scholar, and Science Direct were systematically searched to search for economic evaluations. The consolidated health economic evaluation reporting standards statement checklist was utilized to assess the quality of reporting of the included studies. For grading the quality of the included health economic assessments, the Quality of Health Evaluation Studies (QHES) instrument was used. RESULTS: Thirty studies fulfilled the inclusion criteria and were included in the study. The mean QHES score was 80.26 (standard deviation = 8.06). Twenty-five (83.33%, 95% confidence interval [CI]: 0.66-0.92) of the article mentioned perspective of the study. Twenty-nine (96.66%, 95% CI: 0.83-0.99) of the article described the effects of uncertainty for all input parameters. Twenty (66.66%, 95% CI: 0.48-0.80) of the article reported all funding sources. CONCLUSIONS: Overall, the quality of reporting of the included health economic studies was good, which reemphasizes their usefulness in supporting the decision-making procedure about better medicine. The finding of this study will be a small step toward ensuring robust and high-quality health economics data in India.

17.
Zootaxa ; 4966(3): 305320, 2021 May 04.
Article in English | MEDLINE | ID: mdl-34186615

ABSTRACT

Lycodon mackinnoni is a poorly known Himalayan endemic snake known from Western Himalaya. Since the original description of L. mackinnoni almost 112 years ago, this species was not reported from its type locality and its phylogenetic position remain unknown. We herein, provide detail morphological description, comparison with type material, phylogenetic relationship with its congeners and new natural history information.


Subject(s)
Colubridae/classification , Animals , Phylogeny
18.
Mol Biol Rep ; 48(5): 4129-4135, 2021 May.
Article in English | MEDLINE | ID: mdl-34041678

ABSTRACT

Sambar (Rusa unicolor) is the largest oriental deer and has a wide distribution across South and Southeast Asia. Despite its wide distribution range, little information on the genetics of this species is available to date. We examined the genetic variability of Sambar populations using a partial fragment of the mtDNA control region and reconstructed the phylogeographic association of Sambar populations across India. We detected 56 haplotypes with an overall haplotype diversity, Hd = 0.939 ± 0.012 and nucleotide diversity, Pi = 0.029 ± 0.002 in Sambar populations across India. The Sambar populations of Northeast India exhibits 30 localized mtDNA control region haplotypes with no haplotype sharing with other populations of India. We identified a 40 bp tandem repeat motif in the mtDNA control region with variable copy numbers ranging between three to six duplications. The Sambar populations across India exhibited phylogeographic differentiation based on the observed insertion and deletion patterns in the mtDNA control region. The 40 bp tandem repeat motif was associated with patterns of insertions and deletions among different populations of Sambar in India. The findings of this study provide baseline information on the mtDNA genetic variability of Sambar populations across India, which is crucial for future population genetic studies.


Subject(s)
Base Pairing/genetics , DNA, Mitochondrial/genetics , Deer/genetics , INDEL Mutation , Mutagenesis, Insertional/genetics , Sequence Deletion/genetics , Tandem Repeat Sequences/genetics , Animals , DNA Copy Number Variations , Haplotypes , India , Phylogeny
19.
BMC Ecol Evol ; 21(1): 49, 2021 03 23.
Article in English | MEDLINE | ID: mdl-33757420

ABSTRACT

BACKGROUND: Identifying factors shaping population genetic structure across continuous landscapes in the context of biogeographic boundaries for lineage diversification has been a challenging goal. The red muntjacs cover a wide range across multiple vegetation types, making the group an excellent model to study South and Southeast Asian biogeography. Therefore, we analysed mitogenomes and microsatellite loci, confirming the number of red muntjac lineages from India, gaining insights into the evolutionary history and phylogeography of red muntjacs. RESULTS: Our results indicated the Northwestern population of red muntjac or the Himalayan red muntjac (M. aureus) in India as genetically diverse and well-structured, with significant genetic differentiation implying a low level of gene flow. The phylogenetic, population genetic structure, as well as species delimitation analyses, confirm the presence of the lineage from Western Himalayan in addition to the previously identified red muntjac lineages. Relatively low genetic diversity was observed in M. aureus compared to M. vaginalis, M. malabaricus and M. muntjak. The M. aureus and M. vaginalis lineages have split during the late Pleistocene, ~ 1.01 million years ago (Mya), making M. aureus the youngest lineage; whereas, M. malabaricus split earlier, ~ 2.2 Mya and appeared as the oldest lineage among red muntjacs. CONCLUSIONS: Pronounced climate fluctuations during the Quaternary period were pivotal in influencing the current spatial distribution of forest-dwelling species' restriction to Northwestern India. Our finding confirms the distinct Himalayan red muntjac (M. aureus) within the red muntjac group from Northwestern India that should be managed as an Evolutionary Significant Unit (ESU). We recommend a reassessment of the conservation status of red muntjacs for effective conservation and management.


Subject(s)
Genetics, Population , Muntjacs , Animals , India , Phylogeny , Phylogeography
20.
Sci Rep ; 11(1): 5627, 2021 03 11.
Article in English | MEDLINE | ID: mdl-33707622

ABSTRACT

The gharial (Gavialis gangeticus) is a critically endangered crocodylian, endemic to the Indian subcontinent. The species has experienced severe population decline during the twentieth century owing to habitat loss, poaching, and mortalities in passive fishing. Its extant populations have largely recovered through translocation programmes initiated in 1975. Understanding the genetic status of these populations is crucial for evaluating the effectiveness of the ongoing conservation efforts. This study assessed the genetic diversity, population structure, and evidence of genetic bottlenecks of the two managed populations inhabiting the Chambal and Girwa Rivers, which hold nearly 80% of the global gharial populations. We used seven polymorphic nuclear microsatellite loci and a 520 bp partial fragment of the mitochondrial control region (CR). The overall mean allelic richness (Ar) was 2.80 ± 0.40, and the observed (Ho) and expected (He) heterozygosities were 0.40 ± 0.05 and 0.39 ± 0.05, respectively. We observed low levels of genetic differentiation between populations (FST = 0.039, P < 0.05; G'ST = 0.058, P < 0.05 Jost's D = 0.016, P < 0.05). The bottleneck analysis using the M ratio (Chambal = 0.31 ± 0.06; Girwa = 0.41 ± 0.12) suggested the presence of a genetic bottleneck in both populations. The mitochondrial CR also showed a low level of variation, with two haplotypes observed in the Girwa population. This study highlights the low level of genetic diversity in the two largest managed gharial populations in the wild. Hence, it is recommended to assess the genetic status of extant wild and captive gharial populations for planning future translocation programmes to ensure long-term survival in the wild.


Subject(s)
Alligators and Crocodiles/genetics , Endangered Species , Genetic Variation , Microsatellite Repeats/genetics , Animals , Cell Nucleus/genetics , DNA, Mitochondrial/genetics , Genetic Loci , Genetics, Population , Genotype , Geography , India
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